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package com.iflytop.a800.utils; import com.fasterxml.jackson.databind.JsonNode; import com.iflytop.a800.model.MdbIdChip; import com.iflytop.uf.util.UfJsonHelper; import java.util.*; public class ScanResultAnalyser { // id chip
private final MdbIdChip idChip;
// constructor
public ScanResultAnalyser( MdbIdChip idChip ) { this.idChip = idChip; }
// analyse
public List<ScanResultAnalyseResultItem> analyse( String sampleType, float[] scanResult ) { var algo = new ScanResultAnalysisAlgo(); var algoResult = algo.calculate(scanResult, this.idChip.peakCount);
// 处理
List<ScanResultAnalyseResultItem> results = new ArrayList<>(); var projects = UfJsonHelper.jsonToNode(idChip.items); for ( var i=0; i< idChip.itemCount; i++ ) { double valueX = 0; JsonNode funcInfo = null;
var project = projects.get(i); var itemName = project.get("item").asText(); var isPiecewiseFunction = project.get("isPiecewiseFunction").asBoolean(); if ( !isPiecewiseFunction ) { // 非分段函数
var func = project.get("nonPiecewiseFunction"); var xValueSource = func.get("xValueSource").asInt(); valueX = this.calculateRatio(algoResult, xValueSource, itemName); funcInfo = func.get("serum"); if ("WB".equals(sampleType)) { funcInfo = func.get("wb"); } } else { // 分段函数
var func = project.get("piecewiseFunction"); var piecewiseValueSrc = func.get("piecewiseValueSrc").asInt(); var piecewiseValueSrcValue = this.calculateRatio(algoResult, piecewiseValueSrc, itemName); var piecewiseValue = func.get("piecewiseValue").asDouble(); if ( piecewiseValueSrcValue > piecewiseValue ) { // 高浓度
var highXValueSource = func.get("highXValueSource").asInt(); valueX = this.calculateRatio(algoResult, highXValueSource, itemName); funcInfo = func.get("serumHigh"); if ("WB".equals(sampleType)) { funcInfo = func.get("wbHigh"); } } else { // 低浓度
var lowXValueSource = func.get("lowXValueSource").asInt(); valueX = this.calculateRatio(algoResult, lowXValueSource, itemName); funcInfo = func.get("serumLow"); if ("WB".equals(sampleType)) { funcInfo = func.get("wbLow"); } } }
double valueD = funcInfo.get("d").asDouble(); double valueB = funcInfo.get("b").asDouble(); double valueC = funcInfo.get("c").asDouble(); double valueA = funcInfo.get("a").asDouble(); double value = valueA * Math.pow(valueX,3) + valueB * Math.pow(valueX,2) + valueC * valueX + valueD;
// @TODO : 单位也要从配置中读取
var result = new ScanResultAnalyseResultItem(); result.name = itemName; result.value = value; result.unit = "xx/xx"; results.add(result); }
return results; }
/** * @link https://iflytop1.feishu.cn/docx/UnRtdSG4qouMTaxzRb2cjiTTnZe
* @link https://iflytop1.feishu.cn/docx/A0CHdQL6OoTTCSx8MB7cQKEjnSc
* @param result - algo result * @param xSource - x source * @return double - value of ratio */ private double calculateRatio(ScanResultAnalysisAlgo.AlgoResult result, int xSource, String itenName) { // 计算 ratio
Map<String, Float> ratios = new HashMap<>(); if ( 5 == idChip.scanPeakCount ) { var peaks = result.peakInfos; ratios.put("ratio", peaks[3].area / peaks[4].area); // T/C
ratios.put("antiRatio", peaks[3].area / peaks[4].area); // H/C
ratios.put("antiTestRatio", peaks[3].area / peaks[2].area); // T/H
ratios.put("rfRatio", peaks[1].area / peaks[4].area); // R/C
ratios.put("rtRatio", peaks[3].area / peaks[1].area); // T/R
ratios.put("t4Ratio", peaks[0].area / peaks[4].area); // T4/C
ratios.put("t4t3Ratio", peaks[1].area / peaks[0].area); // R/T4
} else if ( 4 == idChip.scanPeakCount && Objects.equals(idChip.scanType, 1) ) { // F 光学
var peaks = result.peakInfos; // H T C
ratios.put("ratio", peaks[1].area / peaks[2].area); // T/C
ratios.put("antiRatio", peaks[0].area / peaks[2].area); // H/C
ratios.put("antiTestRatio", peaks[1].area / peaks[0].area); // T/H
ratios.put("rfRatio", peaks[0].area / peaks[2].area); // R/C @TODO : 待定, 三联卡F光学没有R
ratios.put("rtRatio", peaks[1].area / peaks[0].area); // T/R @TODO : 待定, 三联卡F光学没有R
} else if ( 4 == idChip.scanPeakCount && Objects.equals(idChip.scanType, 2) ) { // T 光学
var peaks = result.peakInfos; // R H T C
ratios.put("ratio", peaks[2].area / peaks[3].area); // T/C
ratios.put("antiRatio", peaks[1].area / peaks[3].area); // H/C
ratios.put("antiTestRatio", peaks[2].area / peaks[1].area); // T/H
ratios.put("rfRatio", peaks[0].area / peaks[3].area); // R/C
ratios.put("rtRatio", peaks[2].area / peaks[0].area); // T/R
} else if ( 3 == idChip.scanPeakCount ) { var peaks = result.peakInfos; // H T C
ratios.put("ratio", peaks[1].area / peaks[2].area); // T/C
ratios.put("antiRatio", peaks[0].area / peaks[2].area); // H/C
ratios.put("antiTestRatio", peaks[1].area / peaks[0].area); // T/H
} else if ("PCT".equals(itenName)) { var peaks = result.peakInfos; // C T
ratios.put("ratio", peaks[1].area / peaks[0].area); // T/C
} else if ( 2 == idChip.scanPeakCount ) { var peaks = result.peakInfos; // T C
ratios.put("ratio", peaks[0].area / peaks[1].area); // T/C
} else { throw new RuntimeException("unknown scan peak count" + idChip.scanPeakCount); }
// calculate ratio by x source
if ( 1 == xSource ) { return ratios.get("ratio"); } else if ( 2 == xSource ) { return ratios.get("antiTestRatio"); } else if ( 3 == xSource ) { return ratios.get("antiRatio"); } else if ( 4 == xSource ) { return ratios.get("ratio") + ratios.get("antiTestRatio"); } else if ( 5 == xSource ) { // @TODO : 这里 R-ratio 不知道是啥
throw new RuntimeException("不知道 R-Ratio 是啥"); } else if ( 6 == xSource ) { return ratios.get("t4Ratio"); } else { throw new RuntimeException("unknown x source" + xSource); } } }
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