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143 lines
6.9 KiB
143 lines
6.9 KiB
package com.iflytop.a800.utils;
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import com.fasterxml.jackson.databind.JsonNode;
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import com.iflytop.a800.model.MdbIdChip;
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import com.iflytop.uf.util.UfJsonHelper;
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import java.util.*;
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public class ScanResultAnalyser {
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// id chip
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private final MdbIdChip idChip;
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// constructor
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public ScanResultAnalyser( MdbIdChip idChip ) {
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this.idChip = idChip;
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}
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// analyse
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public List<ScanResultAnalyseResultItem> analyse( String sampleType, float[] scanResult ) {
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var algo = new ScanResultAnalysisAlgo();
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var algoResult = algo.calculate(scanResult, this.idChip.peakCount);
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// 处理
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List<ScanResultAnalyseResultItem> results = new ArrayList<>();
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var projects = UfJsonHelper.jsonToNode(idChip.items);
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for ( var i=0; i< idChip.itemCount; i++ ) {
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double valueX = 0;
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JsonNode funcInfo = null;
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var project = projects.get(i);
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var itemName = project.get("item").asText();
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var isPiecewiseFunction = project.get("isPiecewiseFunction").asBoolean();
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if ( !isPiecewiseFunction ) { // 非分段函数
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var func = project.get("nonPiecewiseFunction");
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var xValueSource = func.get("xValueSource").asInt();
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valueX = this.calculateRatio(algoResult, xValueSource, itemName);
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funcInfo = func.get("serum");
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if ("WB".equals(sampleType)) {
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funcInfo = func.get("wb");
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}
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} else { // 分段函数
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var func = project.get("piecewiseFunction");
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var piecewiseValueSrc = func.get("piecewiseValueSrc").asInt();
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var piecewiseValueSrcValue = this.calculateRatio(algoResult, piecewiseValueSrc, itemName);
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var piecewiseValue = func.get("piecewiseValue").asDouble();
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if ( piecewiseValueSrcValue > piecewiseValue ) { // 高浓度
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var highXValueSource = func.get("highXValueSource").asInt();
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valueX = this.calculateRatio(algoResult, highXValueSource, itemName);
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funcInfo = func.get("serumHigh");
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if ("WB".equals(sampleType)) {
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funcInfo = func.get("wbHigh");
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}
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} else { // 低浓度
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var lowXValueSource = func.get("lowXValueSource").asInt();
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valueX = this.calculateRatio(algoResult, lowXValueSource, itemName);
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funcInfo = func.get("serumLow");
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if ("WB".equals(sampleType)) {
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funcInfo = func.get("wbLow");
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}
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}
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}
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double valueD = funcInfo.get("d").asDouble();
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double valueB = funcInfo.get("b").asDouble();
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double valueC = funcInfo.get("c").asDouble();
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double valueA = funcInfo.get("a").asDouble();
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double value = valueA * Math.pow(valueX,3) + valueB * Math.pow(valueX,2) + valueC * valueX + valueD;
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// @TODO : 单位也要从配置中读取
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var result = new ScanResultAnalyseResultItem();
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result.name = itemName;
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result.value = value;
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result.unit = "xx/xx";
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results.add(result);
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}
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return results;
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}
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/**
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* @link https://iflytop1.feishu.cn/docx/UnRtdSG4qouMTaxzRb2cjiTTnZe
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* @link https://iflytop1.feishu.cn/docx/A0CHdQL6OoTTCSx8MB7cQKEjnSc
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* @param result - algo result
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* @param xSource - x source
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* @return double - value of ratio
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*/
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private double calculateRatio(ScanResultAnalysisAlgo.AlgoResult result, int xSource, String itenName) {
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// 计算 ratio
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Map<String, Float> ratios = new HashMap<>();
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if ( 5 == idChip.scanPeakCount ) {
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var peaks = result.peakInfos;
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ratios.put("ratio", peaks[3].area / peaks[4].area); // T/C
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ratios.put("antiRatio", peaks[3].area / peaks[4].area); // H/C
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ratios.put("antiTestRatio", peaks[3].area / peaks[2].area); // T/H
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ratios.put("rfRatio", peaks[1].area / peaks[4].area); // R/C
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ratios.put("rtRatio", peaks[3].area / peaks[1].area); // T/R
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ratios.put("t4Ratio", peaks[0].area / peaks[4].area); // T4/C
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ratios.put("t4t3Ratio", peaks[1].area / peaks[0].area); // R/T4
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} else if ( 4 == idChip.scanPeakCount && Objects.equals(idChip.scanType, 1) ) { // F 光学
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var peaks = result.peakInfos; // H T C
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ratios.put("ratio", peaks[1].area / peaks[2].area); // T/C
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ratios.put("antiRatio", peaks[0].area / peaks[2].area); // H/C
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ratios.put("antiTestRatio", peaks[1].area / peaks[0].area); // T/H
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ratios.put("rfRatio", peaks[0].area / peaks[2].area); // R/C @TODO : 待定, 三联卡F光学没有R
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ratios.put("rtRatio", peaks[1].area / peaks[0].area); // T/R @TODO : 待定, 三联卡F光学没有R
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} else if ( 4 == idChip.scanPeakCount && Objects.equals(idChip.scanType, 2) ) { // T 光学
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var peaks = result.peakInfos; // R H T C
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ratios.put("ratio", peaks[2].area / peaks[3].area); // T/C
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ratios.put("antiRatio", peaks[1].area / peaks[3].area); // H/C
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ratios.put("antiTestRatio", peaks[2].area / peaks[1].area); // T/H
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ratios.put("rfRatio", peaks[0].area / peaks[3].area); // R/C
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ratios.put("rtRatio", peaks[2].area / peaks[0].area); // T/R
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} else if ( 3 == idChip.scanPeakCount ) {
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var peaks = result.peakInfos; // H T C
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ratios.put("ratio", peaks[1].area / peaks[2].area); // T/C
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ratios.put("antiRatio", peaks[0].area / peaks[2].area); // H/C
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ratios.put("antiTestRatio", peaks[1].area / peaks[0].area); // T/H
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} else if ("PCT".equals(itenName)) {
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var peaks = result.peakInfos; // C T
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ratios.put("ratio", peaks[1].area / peaks[0].area); // T/C
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} else if ( 2 == idChip.scanPeakCount ) {
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var peaks = result.peakInfos; // T C
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ratios.put("ratio", peaks[0].area / peaks[1].area); // T/C
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} else {
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throw new RuntimeException("unknown scan peak count" + idChip.scanPeakCount);
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}
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// calculate ratio by x source
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if ( 1 == xSource ) {
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return ratios.get("ratio");
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} else if ( 2 == xSource ) {
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return ratios.get("antiTestRatio");
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} else if ( 3 == xSource ) {
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return ratios.get("antiRatio");
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} else if ( 4 == xSource ) {
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return ratios.get("ratio") + ratios.get("antiTestRatio");
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} else if ( 5 == xSource ) {
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// @TODO : 这里 R-ratio 不知道是啥
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throw new RuntimeException("不知道 R-Ratio 是啥");
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} else if ( 6 == xSource ) {
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return ratios.get("t4Ratio");
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} else {
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throw new RuntimeException("unknown x source" + xSource);
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}
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}
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}
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